The rigid-bond model [Hirshfeld (1976). Acta Cryst. A32, 239–244] states that the mean-square displacements of two atoms are equal in the direction of the bond joining them. This criterion is widely used for verification (as intended by Hirshfeld) and also as a restraint in structure refinement as suggested by Rollett [Crystallographic Computing (1970), edited by F. R. Ahmed et al., pp. 167–181. Copenhagen: Munksgaard]. By reformulating this condition, so that the relative motion of the two atoms is required to be perpendicular to the bond, the number of restraints that can be applied per anisotropic atom is increased from about one to about three. Application of this condition to 1,3-distances in addition to the 1,2-distances means that on...
An essential step in macromolecular refinement is the selection of model parameters which give as go...
Proteins are dynamic molecules involved in virtually every chemical process in our bodies. Understan...
The refinement of biomolecular crystallographic models relies on geometric restraints to help to add...
Under the assumption that covalent bonds are rigid, it is possible to compare the estimations of rig...
Crystallographic restraints are widely used during refinement of small-molecule and macromolecular c...
Background: Protein structural rigidity was analyzed in a non-redundant ensemble of high-resolution ...
The traditional Waser distance restraint, the rigid-bond restraint and atomic displacement parameter...
A new approach is presented for determining the rigid regions in proteins and the flexible joints be...
SummaryThe automated building of a protein model into an electron density map remains a challenging ...
Computer simulation of proteins in aqueous solution at the atomic level of resolution is still limit...
Atomistic simulations can not achieve the time and length scales of many important biological proble...
Improvements in structural biology methods, in particular crystallography and cryo-electron microsco...
At the resolution available from most macromolecular crystals, the X-ray data alone are insufficient...
To the best of our knowledge, one or more authors of this paper were federal employees when contribu...
Through their motion, proteins perform essential functions in the living cell. Although we cannot ob...
An essential step in macromolecular refinement is the selection of model parameters which give as go...
Proteins are dynamic molecules involved in virtually every chemical process in our bodies. Understan...
The refinement of biomolecular crystallographic models relies on geometric restraints to help to add...
Under the assumption that covalent bonds are rigid, it is possible to compare the estimations of rig...
Crystallographic restraints are widely used during refinement of small-molecule and macromolecular c...
Background: Protein structural rigidity was analyzed in a non-redundant ensemble of high-resolution ...
The traditional Waser distance restraint, the rigid-bond restraint and atomic displacement parameter...
A new approach is presented for determining the rigid regions in proteins and the flexible joints be...
SummaryThe automated building of a protein model into an electron density map remains a challenging ...
Computer simulation of proteins in aqueous solution at the atomic level of resolution is still limit...
Atomistic simulations can not achieve the time and length scales of many important biological proble...
Improvements in structural biology methods, in particular crystallography and cryo-electron microsco...
At the resolution available from most macromolecular crystals, the X-ray data alone are insufficient...
To the best of our knowledge, one or more authors of this paper were federal employees when contribu...
Through their motion, proteins perform essential functions in the living cell. Although we cannot ob...
An essential step in macromolecular refinement is the selection of model parameters which give as go...
Proteins are dynamic molecules involved in virtually every chemical process in our bodies. Understan...
The refinement of biomolecular crystallographic models relies on geometric restraints to help to add...