HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative correction method and is based on a memory-efficient data format for Hi-C contact maps. In addition, HiC-Pro can use phased genotype data to build allele-specific contact maps. We applied HiC-Pro to different Hi-C datasets, demonstrating its ability to easily process large data in a reasonable time. Source code and documentation are available a
HiC-bench: a Hi-C analysis pipeline that allows combinatorial parameter exploration and benchmarking...
Hi-C data has enabled the genome-wide study of chromatin folding, and has led to important discoveri...
HiCUP is a bioinformatics pipeline for processing Hi-C data. For full instructions on how to use H...
International audienceHiC-Pro is an optimized and flexible pipeline for processing Hi-C data from ra...
HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized ...
HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experime...
HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experime...
Fit-Hi-C is a programming application to compute statistical confidence estimates for Hi-C contact m...
International audienceAbstract Background With the development of HiC technology, more and more HiC ...
First version of nf-core Hi-C pipeline based on the HiC-Pro pipeline. The current version supports m...
Abstract Background Chromatin ...
In the epigenetics field, large-scale functional genomics datasets of ever-increasing size and compl...
The supplementary data file contains a description of the dataset used for this study as well as det...
Hi-C experiments generate data in form of large genome contact maps (Hi-C maps). These show that chr...
Hi-C experiments explore the 3D structure of the genome, generating terabases of data to create high...
HiC-bench: a Hi-C analysis pipeline that allows combinatorial parameter exploration and benchmarking...
Hi-C data has enabled the genome-wide study of chromatin folding, and has led to important discoveri...
HiCUP is a bioinformatics pipeline for processing Hi-C data. For full instructions on how to use H...
International audienceHiC-Pro is an optimized and flexible pipeline for processing Hi-C data from ra...
HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized ...
HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experime...
HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experime...
Fit-Hi-C is a programming application to compute statistical confidence estimates for Hi-C contact m...
International audienceAbstract Background With the development of HiC technology, more and more HiC ...
First version of nf-core Hi-C pipeline based on the HiC-Pro pipeline. The current version supports m...
Abstract Background Chromatin ...
In the epigenetics field, large-scale functional genomics datasets of ever-increasing size and compl...
The supplementary data file contains a description of the dataset used for this study as well as det...
Hi-C experiments generate data in form of large genome contact maps (Hi-C maps). These show that chr...
Hi-C experiments explore the 3D structure of the genome, generating terabases of data to create high...
HiC-bench: a Hi-C analysis pipeline that allows combinatorial parameter exploration and benchmarking...
Hi-C data has enabled the genome-wide study of chromatin folding, and has led to important discoveri...
HiCUP is a bioinformatics pipeline for processing Hi-C data. For full instructions on how to use H...