ABSTRACT: Accurate force field parameters for ions are essential for meaningful simulation studies of proteins and nucleic acids. Currently accepted models of ions, especially for divalent ions, do not necessarily reproduce the right physiological behavior of Ca2+ and Mg2+ ions. Saxena and Sept (J. Chem. Theor. Comput. 2013, 9, 3538−3542) described a model, called the multisite-ion model, where instead of treating the ions as an isolated sphere, the charge was split into multiple sites with partial charge. This model provided accurate inner shell coordination of the ion with biomolecules and predicted better free energies for proteins and nucleic acids. Here, we expand and refine the multisite model to describe the behavior of divalent ions...
AbstractIons in water are important throughout biology, from molecules to organs. Classically, ions ...
14 pags., 12 figs., 8 tabs. -- Dedicate this paper to the memory of C. Austen AngellIn this work, we...
Monte Carlo simulations have been performed for ion distributions outside a single globular macroion...
Biomolecular processes involve hydrated ions, and thus molecular simulations of such processes requi...
Biomolecular processes involve hydrated ions, and thus molecular simulations of such processes requi...
The monovalent ions Na+ and K+ and Cl− are present in any living organism. The fundamental thermodyn...
The alkaline earth metals calcium and magnesium are critically involved in many biomolecular process...
Molecular simulations are an important tool in the study of aqueous salt solutions. To predict the p...
We develop force field parameters for the divalent cations Mg2+, Ca2+, Sr2+, and Ba2+ for molecular ...
Magnesium and calcium play an essential role in the folding and function of nucleic acids. To correc...
The osmotic pressure of dilute electrolyte solutions containing charged macro-ions as well as counte...
The properties of aqueous ionic solutions are determined by strong electrostatic interactions, which...
Chemical thermodynamic models of solvent and solute activities predict the equilibrium behavior of a...
Classical molecular dynamics simulations of several aqueous alkali halide salt solutions have been u...
A crucial determinant of Hofmeister effects is the direct interaction of ions in solution with the c...
AbstractIons in water are important throughout biology, from molecules to organs. Classically, ions ...
14 pags., 12 figs., 8 tabs. -- Dedicate this paper to the memory of C. Austen AngellIn this work, we...
Monte Carlo simulations have been performed for ion distributions outside a single globular macroion...
Biomolecular processes involve hydrated ions, and thus molecular simulations of such processes requi...
Biomolecular processes involve hydrated ions, and thus molecular simulations of such processes requi...
The monovalent ions Na+ and K+ and Cl− are present in any living organism. The fundamental thermodyn...
The alkaline earth metals calcium and magnesium are critically involved in many biomolecular process...
Molecular simulations are an important tool in the study of aqueous salt solutions. To predict the p...
We develop force field parameters for the divalent cations Mg2+, Ca2+, Sr2+, and Ba2+ for molecular ...
Magnesium and calcium play an essential role in the folding and function of nucleic acids. To correc...
The osmotic pressure of dilute electrolyte solutions containing charged macro-ions as well as counte...
The properties of aqueous ionic solutions are determined by strong electrostatic interactions, which...
Chemical thermodynamic models of solvent and solute activities predict the equilibrium behavior of a...
Classical molecular dynamics simulations of several aqueous alkali halide salt solutions have been u...
A crucial determinant of Hofmeister effects is the direct interaction of ions in solution with the c...
AbstractIons in water are important throughout biology, from molecules to organs. Classically, ions ...
14 pags., 12 figs., 8 tabs. -- Dedicate this paper to the memory of C. Austen AngellIn this work, we...
Monte Carlo simulations have been performed for ion distributions outside a single globular macroion...