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Abstract: In the case of F-theory compactifications on genus-one fibrations without section there are naturally appearing discrete symmetries, which we argue to be associated to geo-metrically massive U(1) gauge symmetries. These discrete symmetries are shown to induce non-trivial selection rules for the allowed Yukawa couplings in SU(N) gauge theories. The general discussion is exemplified using a concrete Calabi-Yau fourfold realizing an SU(5) GUT model. We observe that M2 instanton effects appear to play a key role in the generation of new superpotential terms and in the dynamics close to phase transition loci. ar X i