Due to the advancements in technology number of entries in the structural database of pro-teins are increasing day by day. Methods for retrieving protein tertiary structures from this large database is the key to comparative analysis of structures which plays an important role to under-stand proteins and their function. In this paper, we present fast and accurate methods for the retrieval of proteins from a large database with tertiary structures similar to a query protein. Our proposed methods borrow ideas from the field of computer vision. The speed and accuracy of our methods comes from the two newly introduced features, the co-occurrence matrix of the ori-ented gradient and pyramid histogram of oriented gradient and from the use of Eucl...
International audienceAn innovative bioinformatic method has been designed and implemented to detect...
Many approaches have been proposed for protein structure analysis and comparison. In this chapter th...
A novel approach for similarity search on protein structure databases is proposed which incorporates...
The entire dissertation/thesis text is included in the research.pdf file; the official abstract appe...
Abstract. Since the 3D structure of a protein determines its function, the protein structural identi...
Comparison and classification of folding patterns from a database of protein structures is crucial t...
International audienceMotivation The investigation of the structure of biological systems at the mol...
Abstract Motivation The investigation of the structure of biological systems at the molecular leve...
Background: In recent times, there has been an exponential rise in the number of protein structures ...
As protein databases continue to grow in size, exhaustive search methods that compare a query struct...
This paper presents an approach for protein motif retrieval founded on protein secondary structures ...
Given the close relationship between protein structure and function, protein structure searches have...
permits unrestricted use, distribution, and reproduction in any medium, provided the original work i...
Given the close relationship between protein structure and function, protein structure searches have...
Abstract. Proteins are large organic compounds made of amino acids arranged in a linear chain (prima...
International audienceAn innovative bioinformatic method has been designed and implemented to detect...
Many approaches have been proposed for protein structure analysis and comparison. In this chapter th...
A novel approach for similarity search on protein structure databases is proposed which incorporates...
The entire dissertation/thesis text is included in the research.pdf file; the official abstract appe...
Abstract. Since the 3D structure of a protein determines its function, the protein structural identi...
Comparison and classification of folding patterns from a database of protein structures is crucial t...
International audienceMotivation The investigation of the structure of biological systems at the mol...
Abstract Motivation The investigation of the structure of biological systems at the molecular leve...
Background: In recent times, there has been an exponential rise in the number of protein structures ...
As protein databases continue to grow in size, exhaustive search methods that compare a query struct...
This paper presents an approach for protein motif retrieval founded on protein secondary structures ...
Given the close relationship between protein structure and function, protein structure searches have...
permits unrestricted use, distribution, and reproduction in any medium, provided the original work i...
Given the close relationship between protein structure and function, protein structure searches have...
Abstract. Proteins are large organic compounds made of amino acids arranged in a linear chain (prima...
International audienceAn innovative bioinformatic method has been designed and implemented to detect...
Many approaches have been proposed for protein structure analysis and comparison. In this chapter th...
A novel approach for similarity search on protein structure databases is proposed which incorporates...