Molecular force fields have been approaching a generational transition over the past several years, moving away from well-established and well-tuned, but intrinsically limited, fixed point charge models toward more intricate and expensive polarizable models that should allow more accurate description of molecular properties. The recently introduced AMOEBA force field is a leading publicly available example of this next generation of theoretical model, but to date, it has only received relatively limited validation, which we address here. We show that the AMOEBA force field is in fact a significant improvement over fixed charge models for small molecule structural and thermodynamic observables in particular, although further fine-tuning is n...
AMOEBA is a molecular mechanics force field that addresses some of the shortcomings of a fixed parti...
Hydration free energy (HFE) calculations are often used to assess the performance of biomolecular fo...
We report the first parameters of the heme redox cofactors for the polarizable AMOEBA force field in...
Molecular force fields have been approaching a generational transition over the past several years, ...
Development of the AMOEBA (atomic multipole optimized energetics for biomolecular simulation) force ...
In this work, we have developed an anisotropic polarizable model for the AMOEBA force field that is ...
Classical potentials based on isotropic and additive atomic charges have been widely used to model m...
Abstract A protocol to generate parameters for the AMOEBA polarizable force field for small organic ...
AMOEBA is a molecular mechanics force field that addresses some of the shortcomings of a fixed parti...
The effects of electronic polarization in biomolecular interactions will differ depending on the loc...
textAccurate prediction of protein-ligand binding affinity is essential to computational drug discov...
The reliability of molecular mechanics simulations to predict effects of ion binding to proteins dep...
International audienceClassical molecular dynamics (MD) simulations of electrolyte systems are impor...
In this work, we evaluate the accuracy of the classical AMOEBA model for representing many-body inte...
Hydration free energy calculations are often used to validate molecular simulation methodologies and...
AMOEBA is a molecular mechanics force field that addresses some of the shortcomings of a fixed parti...
Hydration free energy (HFE) calculations are often used to assess the performance of biomolecular fo...
We report the first parameters of the heme redox cofactors for the polarizable AMOEBA force field in...
Molecular force fields have been approaching a generational transition over the past several years, ...
Development of the AMOEBA (atomic multipole optimized energetics for biomolecular simulation) force ...
In this work, we have developed an anisotropic polarizable model for the AMOEBA force field that is ...
Classical potentials based on isotropic and additive atomic charges have been widely used to model m...
Abstract A protocol to generate parameters for the AMOEBA polarizable force field for small organic ...
AMOEBA is a molecular mechanics force field that addresses some of the shortcomings of a fixed parti...
The effects of electronic polarization in biomolecular interactions will differ depending on the loc...
textAccurate prediction of protein-ligand binding affinity is essential to computational drug discov...
The reliability of molecular mechanics simulations to predict effects of ion binding to proteins dep...
International audienceClassical molecular dynamics (MD) simulations of electrolyte systems are impor...
In this work, we evaluate the accuracy of the classical AMOEBA model for representing many-body inte...
Hydration free energy calculations are often used to validate molecular simulation methodologies and...
AMOEBA is a molecular mechanics force field that addresses some of the shortcomings of a fixed parti...
Hydration free energy (HFE) calculations are often used to assess the performance of biomolecular fo...
We report the first parameters of the heme redox cofactors for the polarizable AMOEBA force field in...