Add to ORKGDescription Functions for simulating and plotting cancer progression data, including drivers and passengers, and allowing for order restrictions. Simulations use continuous-time models (based on Bozic et al., 2010 and McFarland et al., 2013) and fitness functions account for possible restrictions in the order of accumulation of mutations. biocViews BiologicalQuestion, SomaticMutatio
OncoSimulR implements forward-time genetic simulations of biallelic loci in asexual populations with...
This work aims to classify the DNA sequences of healthy and malignant cancer respectively. For this,...
Description Functions for species distribution modeling, that is, predicting entire geographic distr...
Description Generation of survival data with one (binary) time-dependent covariate. Generation of su...
Description Copy number analysis of high-throughput sequencing cancer data with fast summarization, ...
Description An assortment of functions that could be useful in analyzing data from psychophysi-cal e...
Depends R (> = 2.10.1), methods Description Performs ratio, GC content correction and normalizati...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, param...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
Understanding the cancer pathology and develop effective treatment strategies play significant roles...
OncoSimulR implements forward-time genetic simulations of biallelic loci in asexual populations with...
This work aims to classify the DNA sequences of healthy and malignant cancer respectively. For this,...
Description Functions for species distribution modeling, that is, predicting entire geographic distr...
Description Generation of survival data with one (binary) time-dependent covariate. Generation of su...
Description Copy number analysis of high-throughput sequencing cancer data with fast summarization, ...
Description An assortment of functions that could be useful in analyzing data from psychophysi-cal e...
Depends R (> = 2.10.1), methods Description Performs ratio, GC content correction and normalizati...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, param...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
Understanding the cancer pathology and develop effective treatment strategies play significant roles...
OncoSimulR implements forward-time genetic simulations of biallelic loci in asexual populations with...
This work aims to classify the DNA sequences of healthy and malignant cancer respectively. For this,...
Description Functions for species distribution modeling, that is, predicting entire geographic distr...