Add to ORKGWe developed a software package called Biomolecular Network Simulator (BNS) to model and simulate complex biomolecular reaction networks. The software uses the Gil-lespie stochastic simulation algorithm for generating Monte Carlo trajectories that describe the evolution of a system of biochemical reactions. This software uses a com-bination of MATLAB and C-coded functions and is paral-lelized with the MatlabMPI library to run on multiproces-sor architectures. Simulations on HPC can be run either in the interac-tive or in the batch mode. The graphical user interface of BNS allows users to easily set parameters for the model and simulations. Furthermore, BNS contains a comprehen-sive set of tools for post-simulation analysis of the results.
Hofestädt R, Meinecke F. Interactive Modelling and Simulation of Biochemical Networks. Computers in ...
Modeling and simulation of biochemical reactions is of great interest in the context of system biolo...
We have witnessed an explosive growth in research involving mathematical models and computer simula...
Abstract reaction event that occurs in the system, the accuracy of the method comes at a high comput...
Background: In recent years, several stochastic simulation algorithms have been developed to generat...
Abstract Background Intrinsic fluctuations due to the...
Original article can be found at: http://www.sciencedirect.com/science/bookseries/0091679X Copyright...
It is a dream of Systems-Biology to efficiently simulate an entire cell on a computer. The potential...
International audienceBecause of the lack of satisfactory solutions to explain biological systems, b...
Motivation: This article describes the development of a useful graphical user interface for stochast...
Motivation: This paper describes the development of a useful graphical user interface for stochastic...
Summary: STOCHSIM is a stochastic simulator for chem-ical reactions. Molecules are represented as in...
The analysis of complex biochemical networks is conducted in two popular conceptual frameworks for m...
International audienceIn this course we will present some of the simulation methods most widely used...
This report compares some stochastic simulation tools for biochemical reaction networks. The stochas...
Hofestädt R, Meinecke F. Interactive Modelling and Simulation of Biochemical Networks. Computers in ...
Modeling and simulation of biochemical reactions is of great interest in the context of system biolo...
We have witnessed an explosive growth in research involving mathematical models and computer simula...
Abstract reaction event that occurs in the system, the accuracy of the method comes at a high comput...
Background: In recent years, several stochastic simulation algorithms have been developed to generat...
Abstract Background Intrinsic fluctuations due to the...
Original article can be found at: http://www.sciencedirect.com/science/bookseries/0091679X Copyright...
It is a dream of Systems-Biology to efficiently simulate an entire cell on a computer. The potential...
International audienceBecause of the lack of satisfactory solutions to explain biological systems, b...
Motivation: This article describes the development of a useful graphical user interface for stochast...
Motivation: This paper describes the development of a useful graphical user interface for stochastic...
Summary: STOCHSIM is a stochastic simulator for chem-ical reactions. Molecules are represented as in...
The analysis of complex biochemical networks is conducted in two popular conceptual frameworks for m...
International audienceIn this course we will present some of the simulation methods most widely used...
This report compares some stochastic simulation tools for biochemical reaction networks. The stochas...
Hofestädt R, Meinecke F. Interactive Modelling and Simulation of Biochemical Networks. Computers in ...
Modeling and simulation of biochemical reactions is of great interest in the context of system biolo...
We have witnessed an explosive growth in research involving mathematical models and computer simula...