Article type Database

RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia
Santos-Zavaleta, Alberto
Gama-Castro, Socorro
Millán-Zárate, Dulce
Díaz-Peredo, Edgar
Sánchez-Solano, Fabiola
Perez Rueda, Ernesto
Bonavides-Martínez, César
Collado-Vides, Julio

January 2001

RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escheri...

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon

Growth Conditions
Juan Segura-salazar
Julio Collado-vides

January 2005

RegulonDB is the internationally recognized refer-ence database of Escherichia coli K-12 offering cu...

Research Article OperomeDB: A Database of Condition-Specific Transcription Units in

Prokaryotic Genomes
Kashish Chetal
Sarath Ch
Ra Janga

January 2015

License, which permits unrestricted use, distribution, and reproduction in any medium, provided the ...

DATABASE Open Access RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Semen A Leyn
Galina Y Kovaleva

January 2016

Background: Genome-scale prediction of gene regulation and reconstruction of transcriptional regulat...

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Novichkov, Pavel S
Kazakov, Alexey E
Ravcheev, Dmitry A
Leyn, Semen A
Kovaleva, Galina Y
Sutormin, Roman A
Kazanov, Marat D
Riehl, William
Arkin, Adam P
Dubchak, Inna
Rodionov, Dmitry A

January 2013

BackgroundGenome-scale prediction of gene regulation and reconstruction of transcriptional regulator...

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.

Novichkov, Pavel S
Brettin, Thomas S
Novichkova, Elena S
Dehal, Paramvir S
Arkin, Adam P
Dubchak, Inna
Rodionov, Dmitry A

July 2012

Web services application programming interface (API) was developed to provide a programmatic access ...

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Novichkov, Pavel S
Laikova, Olga N
Novichkova, Elena S
Gelfand, Mikhail S
Arkin, Adam P
Dubchak, Inna
Rodionov, Dmitry A

January 2010

The RegPrecise database (http://regprecise.lbl.gov) was developed for capturing, visualization and a...

RegTransBase - A Database Of Regulatory Sequences and Interactions in a Wide Range of Prokaryotic Genomes

Kazakov, Alexei E.
Cipriano, Michael J.
Novichkov, Pavel S.
Minovitsky, Simon
Vinogradov, Dmitry V.
Arkin, Adam
Mironov, Andrey A.
Gelfand, Mikhail S.
Dubchak, Inna

July 2006

RegTransBase, a manually curated database of regulatory interactions in prokaryotes, captures the k...

RegTransBase -- a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

Cipriano, Michael J
Novichkov, Pavel N
Kazakov, Alexey E
Rodionov, Dmitry A
Arkin, Adam P
Gelfand, Mikhail S
Dubchak, Inna

April 2013

Abstract Background Due to the constantly growing number of sequenced microbial genomes, comparative...

Article type Methodology article

Bmc Bioinformatics
Janet Piñero
Michael Rautschka
Laura I Furlong
Àlex Bravo
Janet Piñero
Núria Queralt-rosinach
Michael Rautschka
Laura I Furlong

January 2014

This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF ...

Resource for the exploration of regulons accurately predicted by the methods of comparative genomics

Novichkov, Pavel S.

February 2009

Identification and reconstruction of various transcriptional regulons in bacteria using a computatio...

RegPrecise 3.0 - a resource for genome-scale exploration of transcriptional regulation in Bacteria

Novichkov, Pavel S.
Kazakov, Alexey E.
Ravcheev, Dmitry
Leyn, Semen A.
Kovaleva, Galina Y.
Sutormin, Roman A.
Kazanov, Marat D.
Riehl, William
Arkin, Adam P.
Dubchak, Inna
Rodionov, Dmitry A.

January 2013

Background: Genome-scale prediction of gene regulation and reconstruction of transcriptional regulat...

Progress in the development of the RegTransBase database and the comparative analysis system

Cipriano, Michael J.

February 2009

RegTransBase, a database describing regulatory interactions in prokaryotes, has been developed as a ...

The analysis and expansion of regulatory binding site data in a wide range of bacteria through the use of a semi-automatic system - RegTransBase

Cipriano, Michael J.

February 2008

RegTransBase, a database describing regulatory interactions in prokaryotes, has been developed as a ...

The analysis and expansion of regulatory binding site data in a wide range of bacteria using a semi-automatic system - RegTransBase

Novichkov, Pavel
Cipriano, Michael
Kazakov, Alexey
Ravcheev, Dmitry
Arkin, Adam
Gelfand, Mikhail
Dubchak, Inna

June 2008

RegTransBase, a database describing regulatory interactions in prokaryotes, has been developed as a ...

RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia
Santos-Zavaleta, Alberto
Gama-Castro, Socorro
Millán-Zárate, Dulce
Díaz-Peredo, Edgar
Sánchez-Solano, Fabiola
Perez Rueda, Ernesto
Bonavides-Martínez, César
Collado-Vides, Julio

January 2001

RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escheri...

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon

Growth Conditions
Juan Segura-salazar
Julio Collado-vides

January 2005

RegulonDB is the internationally recognized refer-ence database of Escherichia coli K-12 offering cu...

Research Article OperomeDB: A Database of Condition-Specific Transcription Units in

Prokaryotic Genomes
Kashish Chetal
Sarath Ch
Ra Janga

January 2015

License, which permits unrestricted use, distribution, and reproduction in any medium, provided the ...

DATABASE Open Access RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Semen A Leyn
Galina Y Kovaleva

January 2016

Background: Genome-scale prediction of gene regulation and reconstruction of transcriptional regulat...

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Novichkov, Pavel S
Kazakov, Alexey E
Ravcheev, Dmitry A
Leyn, Semen A
Kovaleva, Galina Y
Sutormin, Roman A
Kazanov, Marat D
Riehl, William
Arkin, Adam P
Dubchak, Inna
Rodionov, Dmitry A

January 2013

BackgroundGenome-scale prediction of gene regulation and reconstruction of transcriptional regulator...

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.

Novichkov, Pavel S
Brettin, Thomas S
Novichkova, Elena S
Dehal, Paramvir S
Arkin, Adam P
Dubchak, Inna
Rodionov, Dmitry A

July 2012

Web services application programming interface (API) was developed to provide a programmatic access ...

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Novichkov, Pavel S
Laikova, Olga N
Novichkova, Elena S
Gelfand, Mikhail S
Arkin, Adam P
Dubchak, Inna
Rodionov, Dmitry A

January 2010

The RegPrecise database (http://regprecise.lbl.gov) was developed for capturing, visualization and a...

RegTransBase - A Database Of Regulatory Sequences and Interactions in a Wide Range of Prokaryotic Genomes

Kazakov, Alexei E.
Cipriano, Michael J.
Novichkov, Pavel S.
Minovitsky, Simon
Vinogradov, Dmitry V.
Arkin, Adam
Mironov, Andrey A.
Gelfand, Mikhail S.
Dubchak, Inna

July 2006

RegTransBase, a manually curated database of regulatory interactions in prokaryotes, captures the k...

RegTransBase -- a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

Cipriano, Michael J
Novichkov, Pavel N
Kazakov, Alexey E
Rodionov, Dmitry A
Arkin, Adam P
Gelfand, Mikhail S
Dubchak, Inna

April 2013

Abstract Background Due to the constantly growing number of sequenced microbial genomes, comparative...

Article type Methodology article

Bmc Bioinformatics
Janet Piñero
Michael Rautschka
Laura I Furlong
Àlex Bravo
Janet Piñero
Núria Queralt-rosinach
Michael Rautschka
Laura I Furlong

January 2014

This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF ...

Resource for the exploration of regulons accurately predicted by the methods of comparative genomics

Novichkov, Pavel S.

February 2009

Identification and reconstruction of various transcriptional regulons in bacteria using a computatio...

RegPrecise 3.0 - a resource for genome-scale exploration of transcriptional regulation in Bacteria

Novichkov, Pavel S.
Kazakov, Alexey E.
Ravcheev, Dmitry
Leyn, Semen A.
Kovaleva, Galina Y.
Sutormin, Roman A.
Kazanov, Marat D.
Riehl, William
Arkin, Adam P.
Dubchak, Inna
Rodionov, Dmitry A.

January 2013

Background: Genome-scale prediction of gene regulation and reconstruction of transcriptional regulat...

Progress in the development of the RegTransBase database and the comparative analysis system

Cipriano, Michael J.

February 2009

RegTransBase, a database describing regulatory interactions in prokaryotes, has been developed as a ...

The analysis and expansion of regulatory binding site data in a wide range of bacteria through the use of a semi-automatic system - RegTransBase

Cipriano, Michael J.

February 2008

RegTransBase, a database describing regulatory interactions in prokaryotes, has been developed as a ...

The analysis and expansion of regulatory binding site data in a wide range of bacteria using a semi-automatic system - RegTransBase

Novichkov, Pavel
Cipriano, Michael
Kazakov, Alexey
Ravcheev, Dmitry
Arkin, Adam
Gelfand, Mikhail
Dubchak, Inna

June 2008

RegTransBase, a database describing regulatory interactions in prokaryotes, has been developed as a ...

RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia
Santos-Zavaleta, Alberto
Gama-Castro, Socorro
Millán-Zárate, Dulce
Díaz-Peredo, Edgar
Sánchez-Solano, Fabiola
Perez Rueda, Ernesto
Bonavides-Martínez, César
Collado-Vides, Julio

January 2001

RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escheri...

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon

Growth Conditions
Juan Segura-salazar
Julio Collado-vides

January 2005

RegulonDB is the internationally recognized refer-ence database of Escherichia coli K-12 offering cu...

Research Article OperomeDB: A Database of Condition-Specific Transcription Units in

Prokaryotic Genomes
Kashish Chetal
Sarath Ch
Ra Janga

January 2015

License, which permits unrestricted use, distribution, and reproduction in any medium, provided the ...

Article type Database

Abstract

Extracted data

Article type Database

Abstract

Extracted data

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