Abstract. Environmental models often involve complex dynamic and spatial inputs and outputs. This raises specific issues when performing uncertainty and sensitivity analyses (SA). Based on appli-cations in flood risk assessment and agro-ecology, we present current research to adapt the methods of variance-based SA to such models. After recalling the basic principles, we propose a metamodelling approach of dynamic models based on a reduced-basis approximation of PDEs and we show how the error on the subsequent sensitivity indices can be quantified. We then present a mix of pragmatic and methodological solutions to perform the SA of a dynamic agro-climatic model with non standard input factors. SA is then applied to a flood risk model with sp...