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The yield of chlorophyll from dissolved inorganic nitrogen (DIN) has been shown to be a potentially useful parameter for predicting eutrophication, particularly, in the northerly, coastal waters of the North East Atlantic (NEA). This study investigates whether this parameter might also be appropriate for the southerly, coastal waters of the NEA. Nitrogen enrichment experiments were carried out using microcosms to determine the microplanktonic yield of chlorophyll from DIN in waters from the Ria Formosa (April 2002) and from Sagres (September 2002) on the south coast of Portugal. Continuous culture techniques enabled experiments to be run for 7 days after enrichment so that changes in the cumulative yield over time could be calculated. Yields from the Sagres experiment were consistently higher than those from the Ria Formosa experiment, with respective maximum yields of 4.7 and 2.1 mg chl (mmol N)1, and respective steady-state yields of 3.1 and 0.9 mg chl (mmol N)1. In addition, regressions carried out on historical data sets from the two study sites showed poor correlation between chlorophyll and nitrate. Other differences between the microcosm experiments at the two sites, included: background concentrations of DIN, silicate and phosphate that were, respectively, 5.6 mM, 8.1 mM, and 0.3 mM higher in the Ria; chlorophyll concentrations at Sagres that were double those of the Ria; accumulation of particulate nitrogen that was both more rapid and more substantial at Sagres; a different community structure for the diatoms at the two sites; more numerous autotrophic dinoflagellates, flagellates and cyanobacteria, as well as more numerous protozoan grazers, at Sagres. These differences may explain why the yield of chlorophyll from DIN at Sagres is one of the highest reported i