A veritable zoo of different knots is seen in the ensemble of looped polymer chains, whether created computationally or observed in vitro. At short loop lengths, the spectrum of knots is dominated by the trivial knot (unknot). The fractional abundance of this topological state in the ensemble of all conformations of the loop of N segments follows a decaying exponential form, ∼exp(−N/N0), where N0 marks the crossover from a mostly unknotted (i.e., topologically simple) to a mostly knotted (i.e., topologically complex) ensemble. In the present work, we use computational simulation to look closer into the variation of N0 for a variety of polymer models. Among models examined, N0 is smallest (about 240) for the model with all segments of the sa...
The bond fluctuation method is used to simulate both nonconcatenated entangled and interpenetrating ...
We give two different, statistically consistent definitions of the length l of a prime knot tied ...
Knotting is a prevalent phenomenon which occurs at the macroscale (e.g., in headphone cords) and at ...
We use numerical simulations to investigate how the chain length and topology of freely fluctuating ...
Recent developments in the study of chromatin loop domains and gene regulation motivates us to inves...
Topological constraints can affect both equilibrium and dynamic properties of polymer systems and ca...
The statistical mechanics of a long knotted col-lapsed polymer is determined by a free-energy with a...
We use stochastic simulation techniques to sample the conformational space of linear semiflexible po...
We compare Monte Carlo simulations of knotted and unknotted polymers whose ends are connected to tw...
AbstractLattice modeling is applied to investigate how the configurations of local chain juxtapositi...
The statistical mechanics of a long knotted collapsed polymer is determined by a free energy with a ...
We present a computer simulation study of the compact self-avoiding loops as regards their length an...
The role of the topology and its relation with the geometry of biopolymers under different physic...
ABSTRACT: The unexpected scaling dependence Rn n0.72 of the size Rn of the chain section with n mon...
Inspired by how certain proteins "sense" knots and entanglements in DNA molecules, here we ask if th...
The bond fluctuation method is used to simulate both nonconcatenated entangled and interpenetrating ...
We give two different, statistically consistent definitions of the length l of a prime knot tied ...
Knotting is a prevalent phenomenon which occurs at the macroscale (e.g., in headphone cords) and at ...
We use numerical simulations to investigate how the chain length and topology of freely fluctuating ...
Recent developments in the study of chromatin loop domains and gene regulation motivates us to inves...
Topological constraints can affect both equilibrium and dynamic properties of polymer systems and ca...
The statistical mechanics of a long knotted col-lapsed polymer is determined by a free-energy with a...
We use stochastic simulation techniques to sample the conformational space of linear semiflexible po...
We compare Monte Carlo simulations of knotted and unknotted polymers whose ends are connected to tw...
AbstractLattice modeling is applied to investigate how the configurations of local chain juxtapositi...
The statistical mechanics of a long knotted collapsed polymer is determined by a free energy with a ...
We present a computer simulation study of the compact self-avoiding loops as regards their length an...
The role of the topology and its relation with the geometry of biopolymers under different physic...
ABSTRACT: The unexpected scaling dependence Rn n0.72 of the size Rn of the chain section with n mon...
Inspired by how certain proteins "sense" knots and entanglements in DNA molecules, here we ask if th...
The bond fluctuation method is used to simulate both nonconcatenated entangled and interpenetrating ...
We give two different, statistically consistent definitions of the length l of a prime knot tied ...
Knotting is a prevalent phenomenon which occurs at the macroscale (e.g., in headphone cords) and at ...