Abstract. We present a CGM/BSP algorithm for computing an align-ment (or string editing) between two strings A and C, with jAj = m and jCj = n. The algorithm requires O(p) communication rounds and O( nm p local computing time, on a distributed memory parallel computer of p processors each with O(nm=p) memory. We also present implementation results obtained on Beowulf machine with 64 nodes. Topic of interest: Algorithms and applications in Bioinformatics
This paper describes sequence alignment algorithms of nucleotide sequences. There are described pair...
This paper presents a parallel algorithm for solving the edit distance problem. The edit distance re...
Alignment generally means lining up characters of strings, allowing matches and mismatches and also ...
Abstract. In this paper we present a parallel wavefront algorithm for computing an alignment between...
In this paper we present a parallel wavefront algorithm for computing an alignment between two strin...
Computing the Edit Distance between two strings is one of the most fundamental problems in computer ...
In this paper. we show new parallel algorithms for a set of classical string comparison problems. co...
There are a few algorithms designed to solve the problem of the optimal alignment of one sequence, t...
Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine th...
We consider the problem of aligning two very long biological sequences. The score for the best align...
Abstract Background The problem of approximate string matching is important in many different areas ...
AbstractDynamic programming algorithms to determine similar regions of two sequences are useful for ...
Graduation date: 1993As the volume of genetic sequence data increases due to improved sequencing\ud ...
Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine th...
Abstract. The Local Alignment problem is a classical problem with ap-plications in biology. Given tw...
This paper describes sequence alignment algorithms of nucleotide sequences. There are described pair...
This paper presents a parallel algorithm for solving the edit distance problem. The edit distance re...
Alignment generally means lining up characters of strings, allowing matches and mismatches and also ...
Abstract. In this paper we present a parallel wavefront algorithm for computing an alignment between...
In this paper we present a parallel wavefront algorithm for computing an alignment between two strin...
Computing the Edit Distance between two strings is one of the most fundamental problems in computer ...
In this paper. we show new parallel algorithms for a set of classical string comparison problems. co...
There are a few algorithms designed to solve the problem of the optimal alignment of one sequence, t...
Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine th...
We consider the problem of aligning two very long biological sequences. The score for the best align...
Abstract Background The problem of approximate string matching is important in many different areas ...
AbstractDynamic programming algorithms to determine similar regions of two sequences are useful for ...
Graduation date: 1993As the volume of genetic sequence data increases due to improved sequencing\ud ...
Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine th...
Abstract. The Local Alignment problem is a classical problem with ap-plications in biology. Given tw...
This paper describes sequence alignment algorithms of nucleotide sequences. There are described pair...
This paper presents a parallel algorithm for solving the edit distance problem. The edit distance re...
Alignment generally means lining up characters of strings, allowing matches and mismatches and also ...