For molecular dynamics simulations of hydrated proteins a simple yet reliable model for the intermolecular potential for water is required. Such a model must be an effective pair potential valid for liquid densities that takes average many—body interactions into account. We have developed a three—point charge model (on hydrogen and oxygen positions) with a Lennard— Jones 6—12 potential on the oxygen positions only. Parameters for the model were determined from 12 molecular dynamics runs covering the two—dimensional parameter space of charge and oxygen repulsion. Both potential energy and pressure were required to coincide with experimental values. The model has very satisfactory properties, is easily incorporated into protein—water potentia...
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions, mixtu...
Water is ubiquitous on our planet and plays an essential role in several key chemical and biological...
A new interatomic potential for dissociative water was developed for use in molecular dynamics simul...
We have performed long molecular dynamics simulations of water using four popular water models, name...
We investigate the influence of various solvent models on the structural stability and protein–water...
The development of simple and efficient model that correctly represent the important features of wat...
Molecular dynamics (MD) simulations are used to model the structure and movement of macromolecules. ...
Ab4'uci.t — The structures and reactivities of proteins are markedly influenced by water. In co...
The authors propose a new classical model for the water molecule. The geometry of the molecule is bu...
Molecular dynamics (MD) simulations are used to model the structure and movement of macromolecules. ...
We have performed long molecular dynamics simulations of water using four popular water models, name...
Molecular dynamics (MD) simulations are used to model the structure and movement of macromolecules. ...
Molecular simulations of water using classical, molecular mechanic potential energy functions have e...
Presented are parameters for mono-, di-, and trivalent cations compatible with the CHARMM additive f...
Almost 50 years have passed from the first computer simulations of water, and a large number of mole...
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions, mixtu...
Water is ubiquitous on our planet and plays an essential role in several key chemical and biological...
A new interatomic potential for dissociative water was developed for use in molecular dynamics simul...
We have performed long molecular dynamics simulations of water using four popular water models, name...
We investigate the influence of various solvent models on the structural stability and protein–water...
The development of simple and efficient model that correctly represent the important features of wat...
Molecular dynamics (MD) simulations are used to model the structure and movement of macromolecules. ...
Ab4'uci.t — The structures and reactivities of proteins are markedly influenced by water. In co...
The authors propose a new classical model for the water molecule. The geometry of the molecule is bu...
Molecular dynamics (MD) simulations are used to model the structure and movement of macromolecules. ...
We have performed long molecular dynamics simulations of water using four popular water models, name...
Molecular dynamics (MD) simulations are used to model the structure and movement of macromolecules. ...
Molecular simulations of water using classical, molecular mechanic potential energy functions have e...
Presented are parameters for mono-, di-, and trivalent cations compatible with the CHARMM additive f...
Almost 50 years have passed from the first computer simulations of water, and a large number of mole...
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions, mixtu...
Water is ubiquitous on our planet and plays an essential role in several key chemical and biological...
A new interatomic potential for dissociative water was developed for use in molecular dynamics simul...